Arthritis & Rheumatology
○ Wiley
Preprints posted in the last 30 days, ranked by how well they match Arthritis & Rheumatology's content profile, based on 21 papers previously published here. The average preprint has a 0.13% match score for this journal, so anything above that is already an above-average fit.
Nishio, Y.; Ishikawa, Y.; Uchiyama, S.; Liu, X.; Takada, S.; Kuroshima, T.; Yoshifuji, h.; Kodera, M.; Akahoshi, M.; Niiro, H.; Motegi, S.-i.; Hasegawa, M.; Asano, Y.; Nakayamada, S.; Tanaka, Y.; Koyanagi, Y. N.; Matsuo, K.; Kawaguchi, Y.; Kuwana, M.; Imoto, I.; Yamaguchi, Y.; Terao, C.
Show abstract
ObjectivesMosaic chromosomal alterations (mCAs) increase with age and are associated with many diseases, including autoimmune diseases. The associations between mCAs and systemic sclerosis (SSc) and its clinical subtypes have not been explored. MethodsWe recruited study subjects from two independent datasets (Set 1: 635 SSc, 4,401 controls; Set 2: 347 SSc, 2,170 controls) and detected mCAs (Loss, LOH, Gain, and mLOX) from their peripheral blood samples. Logistic regression analyses were conducted with covariates in each cohort, and the results were meta-analyzed. We also conducted stratified analyses by age groups, the age at disease onset, clinical phenotypes based on the skin lesions, autoantibody profiles, the presence of complications. ResultsWe observed a trend of increased Loss in SSc, especially in old age (P=0.0063). The association of Loss was strengthened in certain subtypes of SSc, including lcSSc (OR=2.22, P=0.019) and SSc with vascular complications (digital ulcers, pulmonary hypertension, or renal crisis, OR=3.30, P=0.0054). The effect sizes of Loss increased in patients with high cell fractions (CFs). We also observed that mLOX was significantly associated with SSc, lcSSc, and ACA-SSc only for subjects with high CFs. mLOX was significantly associated with lcSSc and ACA-SSc even compared with dcSSc and ATA-SSc, respectively. These associations were consistently observed in each of the two data sets. Finally, we identified majority of the associations of Loss were mainly driven by SSc with late age at onset. ConclusionsLoss and mLOX were significantly and differentially associated with SSc and its subtypes, underscoring potential phenotype-specific contributions of mCAs. WHAT IS ALREADY KNOWN ON THIS TOPICO_LISystemic sclerosis (SSc) is a heterogeneous disease, with its phenotypes and disease outcomes varying among patients. C_LIO_LIAge-related mosaic chromosomal alterations (mCAs) in blood and subsequent clonal haematopoiesis are associated with various adverse health outcomes. C_LIO_LImCAs have also been linked to several immune-mediated diseases, such as LORA, and hence may influence immune cells and their functions. C_LI WHAT THIS STUDY ADDSO_LIAutosomal copy-number loss (Loss) is increased in SSc in aged subjects. C_LIO_LILoss was associated with lcSSc, ACA-SSc. ILD-SSc, and VC-SSc in a dose-dependent manner of cell fraction. C_LIO_LImLOX was associated with SSc and its subtypes only in patients with high cell fraction. C_LIO_LILate-onset SSc and its subtypes show stronger associations with Loss with higher effect sizes compared to non-late onset SSc. C_LI HOW THIS STUDY MIGHT AFFECT RESEARCH, PRACTICE OR POLICYO_LIOur study facilitates further research to recapitulate the current findings in independent cohorts as well as in different ancestries. C_LIO_LIIncorporating profiles of Loss and mLOX in blood into conventional clinical information may enable a better stratification of SSc patients and the development of a better management strategy. C_LIO_LIFurther experimental approaches, such as whole genome sequences and single-cell C_LI RNA sequences, that investigate the underlying molecular mechanisms of phenotypic heterogeneity of SSc driven by Loss and mLOX are also warranted.
Liu, W.; Zuckerman, B. P.; Schuermans, A.; Orozco, G.; Honigberg, M. C.; Bowes, J.; ONeill, T. W.; Zhao, S. S.
Show abstract
BackgroundOsteoarthritis (OA) is a leading cause of disability worldwide, yet no licensed therapies can prevent or slow its progression. We aimed to identify potential targets for disease-modifying OA drugs (DMOADs) by integrating genetic and differential protein expression (DPE) evidence. MethodsWe evaluated genetically predicted perturbations of plasma protein levels using cis-protein quantitative trait loci (cis-pQTLs) across three large European cohorts (UK Biobank Pharma Proteomics Project, deCODE, and Fenland) and outcome data from the Genetics of Osteoarthritis Consortium, covering 11 OA phenotypes. DPE analyses were performed in 44,789 UKB participants, comparing 2,920 protein measurements between OA cases and controls, supported by sensitivity analyses. Proteins identified through genetic and/or DPE approaches were further assessed in downstream analyses. FindingsIn total, 305 proteins showed evidence of association with OA through genetically predicted perturbations, with 81 supported by colocalisation across datasets. DPE analyses identified 605 proteins associated with at least one OA phenotype, of which 450 (74{middle dot}4%) remained robust after sensitivity testing. Several novel targets were identified, including PPP1R9B, PCSK7, and ITIH4. Integration of both approaches prioritised 5 proteins, 4 of which demonstrated druggable potential, including 3 high-confidence candidates DLK1, TNFRSF9, and OGN. Downstream analyses highlighted key biological pathways and candidate compounds with potential for repurposing. InterpretationThis large-scale study combines genetic and DPE evidence to prioritise candidate DMOAD targets. Findings reinforce established biology while revealing novel proteins and pathways, providing a foundation for therapeutic development in OA. FundingWL is supported by the Guangzhou Elite Project (project no. JY202314). SSZ is supported by The University of Manchester Deans Prize, Arthritis UK Career Development Fellowship (grant no. 23258). This work is supported by the NIHR Manchester Biomedical Research Centre (NIHR203308). Research in contextO_ST_ABSEvidence before this studyC_ST_ABSCirculating proteins have been linked to osteoarthritis (OA) in observational studies, supporting their potential as biomarkers and drug targets. However, differential protein expression analyses are vulnerable to confounding and reverse causation. Mendelian randomisation (MR) studies using proteomic GWAS instruments have suggested causal roles for several circulating proteins in OA-related traits and highlighted druggable candidates. However, many analyses relied on earlier OA GWAS data (e.g., Genetics of Osteoarthritis Consortium 1{middle dot}0) and smaller proteomic GWAS datasets, and typically did not integrate MR findings with large-scale differential protein expression. As a result, it remains unclear how well genetically predicted protein effects align with observed protein expression in OA, and how robust prioritised targets are when replicated across proteomic data from multiple cohorts. Added value of this studyThis study integrates large-scale proteomic MR and differential protein expression (DPE) analyses across multiple OA phenotypes using the largest datasets to date. By combining genetic evidence with observed protein dysregulation in population-based cohorts, we strengthen causal inference and improve robustness of target prioritisation. This approach allows us to distinguish proteins that are likely to play a causal role in OA from those that reflect downstream disease processes, and to highlight targets with greater translational relevance than identified by either method alone. Implications of all the available evidenceTaken together, our findings support a causal role for a subset of circulating proteins in OA and demonstrates the value of integrating genetic and observational proteomic data for target prioritisation. Proteins supported by both MR and DPE are more likely to represent biologically relevant drivers of disease and actionable therapeutic targets. This integrated framework reduces false positives arising from confounding or reverse causation and provides a more reliable basis for drug development, biomarker discovery, and patient stratification in OA.
Pinal-Fernandez, I.; Pak, K.; Casal-Dominguez, M.; Munoz-Braceras, S.; Wigerblad, G.; Dell'Orso, S.; Naz, F.; Islam, S.; Gutierrez-Cruz, G.; Kinder, T. B.; Ogbonnaya-Whittlesey, S. A.; Fernandez-Codina, A.; Giannini, M.; Ellezam, B.; Laverny, G.; Gilbart, V.; Landon-Cardinal, O.; Hudson, M.; Troyanov, Y.; Randazzo, D.; Kenea, A.; Matas-Garcia, A.; Garrabou, G.; Aldecoa, I.; Ailen-Caballero, G.; Gil-Vila, A.; Trallero, E.; Milone, M.; Liewluck, T.; Naddaf, E.; Espinosa, G.; Simeon-Aznar, C. P.; Guillen-Del-Castillo, A.; Preusse, C.; Kleefeld, F.; Bublitz, N.; Stenzel, W.; Meyer, A.; Pope, J. E.
Show abstract
Autoantibody internalization has been implicated in autoimmune disease pathogenesis, yet its mechanisms, and generality across different diseases, cell types, and affected tissues remain poorly defined. Using bulk RNA sequencing, we identified reproducible, autoantibody-specific transcriptomic signatures consistent with autoantigen dysfunction in muscle biopsies from patients with anti-Mi2 dermatomyositis and anti-PM/Scl scleromyositis across independent cohorts. Electroporation of purified patient IgG into primary cultures of healthy cells was sufficient to induce the corresponding transcriptomic programs in vitro. Direct immunofluorescence demonstrated immunoglobulin internalization into subcellular compartments matching the localization of the autoantigen in different affected tissues. Spatial transcriptomic analyses revealed that antibody-secreting cells translocated cytoplasmic material (i.e., immunoglobulin RNA) into adjacent affected cells expressing autoantibody-specific transcripts. The disease-specific transcripts were present not only in muscle fibers, but also in other cells, including macrophages, endothelial cells, and fibroblasts. Autoantibody-induced transcriptomic programs were associated with cell damage and autoantibody-specific reactive inflammatory programs, including activation of type I interferon and TGF-{beta}1 signaling in anti-Mi2 dermatomyositis and activation of type II interferon in anti-PM/Scl scleromyositis. Antibody internalization was also observed in different tissues from patients with other autoimmune diseases, including anti-U1RNP mixed connective tissue disease, anti-Ku overlap syndrome, and anti-Scl70 systemic sclerosis. Together, these findings establish autoantibody internalization as a shared pathogenic mechanism across diverse autoimmune diseases, providing a unifying framework for conditions driven by autoantibodies against intracellular antigens.
McDermott, G. C.; Wang, X.; Davis, N. A.; Paudel, M.; Qi, Y.; Kowalski, E.; Qian, G.; Getachew, L. S.; Mueller, K. T.; Saavedra, A. A.; O'Keeffe, L. A.; Beaule, M.; Gill, R.; Gagne, S.; Byrne, S.; Cho, M. H.; Silverman, E. K.; Negron, M.; Vanni, K. M. M.; Bolden, C.; Mahajan, T.; Mulcaire-Jones, E.; Kortam, N.; Dellaripa, P. F.; Juge, P.-A.; Doyle, T. J.; Bolster, M. B.; Deane, K. D.; Khanna, D.; England, B. R.; San Jose Estepar, R.; Washko, G. R.; Sparks, J. A.
Show abstract
ObjectiveQuantitative computed tomography (QCT) can automatically quantify parenchymal abnormalities on chest CT imaging using deep learning. We leveraged QCT to detect pulmonary abnormalities in patients with early rheumatoid arthritis (RA) compared to healthy controls. MethodsWe analyzed high-resolution CT chest imaging from participants with early RA in the prospective, multicenter, SAIL-RA study and healthy non-smoking controls from the COPDGene study. A deep learning classifier quantified the percentage of normal lung, interstitial abnormalities, and emphysema for each participant. We compared the percentage of QCT features between early RA participants and healthy comparators and examined associations using multivariable linear regression. ResultsWe analyzed 200 participants with early RA (median RA duration 8.3 months, mean age 55.7 years, 74.5% female) and 104 healthy controls (mean age 62.0 years, 68.3% female). The median percentage of interstitial abnormalities on QCT was 3.7% (IQR 2.1, 6.1%) for early RA and 1.6% (IQR 0.8, 2.4%) for healthy controls (p<0.0001). Early RA was associated with 9.3% less normal lung on QCT than healthy controls, adjusted for age and sex (p<0.0001). Among RA participants, QCT interstitial abnormalities were associated with older age (multivariable {beta}=0.1 per year, 95%CI 0.07-0.2, p<0.0001) and higher DAS28-ESR (multivariable {beta}=0.6 per unit, 95%CI 0.01-1.3, p=0.046). ConclusionParticipants with early RA had less normal lung and more interstitial abnormalities on a deep learning-derived QCT measure than healthy controls. These results suggest that loss of normal lung is already present in early RA and emphasizes the urgent need for strategies to preserve lung health in RA.
Inamo, J.; Bylinska, A.; Smith, M.; Vanderlinden, L.; Wright, C.; Stephens, T.; Feser, M. L.; Striebich, C. C.; O'Dell, J. R.; Sparks, J. A.; Davis, J. M.; Graf, J.; McMahon, M. A.; Solow, E. B.; Forbess, L. J.; Tiliakos, A. N.; Fox, D. A.; Danila, M. I.; Horowitz, D. L.; Kay, J.; James, J. A.; Holers, V. M.; Deane, K. D.; Guthridge, J. M.; Zhang, F.
Show abstract
Individuals who have serum elevations of anti-cyclic citrullinated protein (anti-CCP) antibodies are at risk for developing rheumatoid arthritis (RA), yet immunologic factors that lead to a transition from pre- to clinical RA remain unclear. Here, we used materials from anti-CCP antibody-positive individuals enrolled in a clinical trial that evaluated the efficacy of hydroxychloroquine to prevent clinical RA, and performed multi-modal single-cell profiling (transcriptome, surface proteins, T/B-cell receptor sequencing, and chromatin accessibility) on samples obtained at baseline and at RA onset in those who developed clinical RA (Converters) or follow-up point in matched Nonconverters. At both baseline and follow-up, Converters had expansions of peripheral helper T (Tph) cells and CD8+ T cells expressing GZMK and GZMB, along with elevated potentially autoreactive T-cell receptors in CD4+ T cells compared to Nonconverters. Induction of age-associated B cell signatures was observed in B cells of Converters prior to RA onset. Epigenetic profiling further identified chromatin accessibility changes in Converters over time, particularly within myeloid and NK cells. Lastly, predictive modeling using baseline immune features, including Tph cells, GZMK+XCL1+ CD8+, and GZMB+CD57+ CD8+ T cells, together with clinical features such as anti-CCP3 levels, RF-positivity, and HLA shared epitope status, stratified RA risk and predicted time to onset. These findings define immune endotypes in pre-RA that could serve as targets for future preventive interventions and be used to stratify the risk of developing clinical RA in anti-CCP antibody-positive individuals.
Razazan, A.; Merriman, M.; Burden, N.; Reynolds, R.; Joosten, L. A.; Hussain, S.; Merriman, T.
Show abstract
Gout is driven by an interleukin-1{beta}-mediated intense innate immune reaction to monosodium urate (MSU) crystals (MSUc). In cell culture models of inflammatory gout there is a synergistic effect of phagocytosis of MSUc and TLR2 and TLR4 activation by agonists such as free fatty acid and lipopolysaccharide (LPS) in NLRP3-inflammasome activation and IL-1{beta} secretion. A substantial number of gout patients do not report a dietary trigger, and observational studies associate airborne particulate matter with incident gout and flares. Airborne particulate matter contains LPS and airborne-derived particulate matter stimulates IL-1{beta} secretion in cell culture. We hypothesized that air-borne particulate matter could co-stimulate, with MSUc, IL-1{beta} secretion and inflammation. We tested the hypothesis using MSUc with extracted airborne PM4 in human cells (the THP-1 monocyte cell line, primary human monocytes and PBMCs) or carbon black particles with ozone (CB+O3) in a murine foot-pad injection model of gout. There was strong NLRP3-inflammasome-dependent co-stimulation of IL-1{beta} secretion in THP-1 cells with PM4+MSUc and a moderate additive effect in primary human PBMCs. However, there was no added effect on IL-1{beta} secretion of PM4 in isolated primary human monocytes. Inhalation of CB+O3 persistently exacerbated MSUc-induced murine paw inflammation, with an increase of alveolar/lavage macrophages that contained CB+O3 particles and increased lavage expression of IL-1{beta}. In conclusion, airborne-derived PM4 particulate matter enhanced MSUc-induced IL-1{beta} secretion in THP-1 cells and PBMCs. Combined with exacerbation of MSUc-induced inflammation by fine particulate matter in in vivo experiments, these data provide evidence that exposure to fine particulate matter may play a role in the etiology of gout.
Lalaurie, C.; Liu, L.; Khan, A.; Wang, C.; Rich, S.; Barr, R. G.; Bernstein, E.; Kiryluk, K.; McDonnell, T. C. R.; Luo, Y.
Show abstract
Anti-{beta}2-glycoprotein I (anti-{beta}2GPI) antibodies are central to the pathogenesis of antiphospholipid syndrome (APS), an autoimmune disease characterized by a strong predisposition to venous thromboembolism (VTE). In this study, we conducted a multi-ancestry genome-wide association study (GWAS) of quantitative total anti-{beta}2GPI levels in 5,969 participants enrolled in the Multi-Ethnic Study of Atherosclerosis (MESA) and identified a genome-wide significant association at the APOH locus. Paradoxically, genetically determined increases in anti-{beta}2GPI levels at this locus were associated with lower VTE risk. Fine-mapping and functional genomics prioritized the missense variant rs1801690 (W335S) in {beta}2GPI (apolipoprotein H, [APOH]) as the most likely causal variant. This variant has an allele frequency of 5-6% in European and East Asian ancestries but only 1% in African ancestries. Integrating prior experimental studies, molecular dynamics simulations and structure-based epitope prediction, we propose a dual-effect mechanism whereby W335S reduces thrombotic risk by disrupting phospholipid binding in Domain V, yet increases autoantibody production through conformational changes that enhance epitope exposure in Domains I and II. These findings mechanistically uncouple autoantibody formation from thrombotic risk in carriers of the W335S variant, and suggest that APOH genotype may represent a clinically relevant genetic biomarker with potential utility for thrombotic risk stratification in anti-{beta}2GPI-positive individuals.
ramanathan, b.; Cheng Shen, H.; Hudson, M.; Troyanov, Y.; Landon-Cardinal, O.; Gyger, G.; O'Ferrall, E.; Ellezam, B.; Karamchandani, J.; Del Carmen Crespo, C.; Jean, D.; Gerber, Z.; Labrie, M.; Leclair, V.; Allard-Chamard, H.
Show abstract
Autoimmune inflammatory myopathies (AIM) with prominent B cell aggregates (BCM) on muscle biopsy is an uncommon finding. We aimed to compare the characteristics and clinical course of patients with BCM on muscle biopsy to those without and characterize B cell infiltrates in the muscle of these patients. We performed a retrospective study of subjects with AIM in the Canada Inflammatory Myopathy Study (CIMS) cohort to identify cases with BCM on muscle biopsy, which was defined as [≥]30 CD20+ cells/aggregate. AIM cases without BCM that encompassed the broader spectrum of AIM, namely dermatomyositis, overlap myositis and inclusion body myositis were selected as controls. Descriptive statistics were used to compare BCM cases and controls. Cyclic immunofluorescence (Cyc-IF) was performed to characterize inflammatory infiltrates and B cell structures. We included 69 subjects (mean age at diagnosis 51{+/-}16 years, 77% females): 22 BCM, 24 dermatomyositis, 14 overlap myositis, and inclusion body myositis. Most BCM subjects (18/22, 82%) had an associated autoimmune disease: 12 (55%) had systemic sclerosis, 5 (23%) rheumatoid arthritis and one (5%) systemic lupus erythematosus/systemic sclerosis overlap. Extra-muscular features found in BCM patients included arthritis (50%), interstitial lung disease (43%), Raynauds phenomenon (32%), and dermatomyositis rash (27%). Two patients (9%) had facial muscle weakness and one (5%) had positive anti-AChR autoantibodies. In BCM subjects, upper extremities were weaker than lower extremities in 7/21 (33%) of cases. Neck flexor weakness was frequent (17/22, 77%), while neck extensor weakness was uncommon (1/15, 7%). Cyclic immunofluorescence (Cyc-IF) spatial analysis of BCM biopsies displayed many features akin to tertiary lymphoid structures. Findings suggest possible involvement of both the traditional germinal center reaction and the extrafollicular pathway in BCM. In conclusion, in this series of myositis with B cell aggregates reported to date we found clinical similarities (i.e., associated with overlapping autoimmune diseases) and differences (i.e., muscle weakness distribution) with previous reports. The discovery of tertiary lymphoid structures on spatial analysis of muscle biopsies of BCM patients provides novel insight into its pathophysiology and potential therapeutic targets.
Koller, C. N.; Maglione, J.; Blanchard, M.; Kleyer, A.; Folle, L.; Geurts, J.; Huegle, T.
Show abstract
ObjectiveTo clinically evaluate a digital biomarker, the Finger Fold Index (FFI), derived from the ratio of joint diameter to finger fold surface area in hand photographs, for assessing joint swelling in inflammatory arthritis. MethodsSmartphone hand photographs from two routine care cohorts of patients with rheumatoid (RA) and psoriatic arthritis (PsA) were analyzed using a machine learning pipeline for automated detection and processing of proximal interphalangeal (PIP) joints. The FFI was clinically evaluated by correlation with joint swelling scores (0-3) and DAS28-CRP. A healthy cohort was used to establish FFI reference ranges, which were then compared to the arthritis cohorts. ResultsA total of 1275 PIP joint images of 124 arthritis patients and 53 healthy individuals were included. FFI values correlated with swelling scores in the arthritis population with r = 0.443 (95% CI 0.384-0.498). A correlation was observed between the mean FFI and DAS28-CRP dichotomized at 3.2 (r = 0.310, 95% CI 0.123-0.475). FFI values exceeding the healthy reference ranges were associated with swelling (Cramers V = 0.400-0.631; p < 0.001). ConclusionFFI values derived from hand photographs showed a significant association with clinical joint swelling and disease activity in RA and PsA patients. Longitudinal studies are needed to assess sensitivity to change and to establish whether this biomarker can be reliably used for remote patient monitoring.
Kumar, A.; Kumar, U.; Khan, M. A.; Yadav, R. K.; Singh, A.; Venkataraman, S.; Deepak, K. K.; Dada, R.; Bhatia, R.
Show abstract
Background and AimFibromyalgia is an idiopathic chronic widespread pain syndrome affecting 2-4% of the general population globally. Besides widespread fibromyalgia pain, morning stiffness, associated neurologic as well as sleep problems are also reported. Disease is more prevalent in females of middle-age group with low socioeconomic status, thus deteriorating overall productivity and psychosocial health. There is no permanent cure of the disease. This study aimed to explore, validate and assess the effect of four weeks of supervised yogic intervention on pain status, quality of life, sleep, cortical excitability, flexibility and range of motion in fibromyalgia patients, as compared to standard therapy. MethodCase-control study, interventional study and assessor-blined randomized controlled trial, conducted in 120 fibromyalgia patients (60 yoga group: 60 waitlisted controls) and 60 age-matched healthy controls. Pain was assessed subjectively, using questionnaires and objectively, using quantitative sensory testing and ELISA. Sleep and quality of life were assessed using common and disease specific decsiptors. Flexibility and range of motion was assessed using sit and reach box, lateral goniometry and modified Schobers test. Transcranial magnetic stimulation on M1 was used to assess corticomotor excitability of participants. Study parameters were assessed at baseline and after four weeks of the intervention. ResultsA significantly poor sleep, flexibility and quality of life was reported in the fibromyalgia patients due to excruciating pain (VAS = 6.92{+/-}0.12); corticomotor function was also abnormal in the patients, which were restored after four weeks of yogic intervention. On subjective and objective assessment of pain, we found significant relief and improvement in pain status in the yoga group as compared to the waitlisted controls. Fibromyalgia impact, sleep, quality of life and flexibility were also found solely better in fibromyalgia patients undergoing yogic interventions. Cortical parameters, specifically RMT, MEPs and MEP recruitment curves showed a significant improvement in yoga group as compared to waitlisted controls. ConclusionFour weeks of regular and supervised yogic intervention may ameliorate pain, improve flexibility and range of motion and changes cortical plasticity in the Indian cohort of fibromyalgia patients, as compared to standard therapy. Yoga-based interventions can also improve overall quality of life and sleep impairmentsby reducing catastrophization and fibromyalgia impact.
Yang, S.; Hawryluk, C.; Liu, J.; Eckert, N.; Otoo, J.; Vina, E. R.; Yao, L.
Show abstract
ObjectiveTo apply large language models (LLMs) to Reddit posts referencing systemic lupus erythematosus (SLE) to identify patient-expressed unmet medical needs, symptom experiences, and healthcare challenges, demonstrating how AI-enabled social media listening complements traditional patient-experience research. MethodsWe extracted 4,633 posts from ten SLE-related or health-focused Reddit communities using the public Reddit API (October-November 2025). After removing duplicates, promotional content, and posts with insufficient information, 2,603 posts remained. A thematic codebook was developed through manual review of 300 posts and iteratively refined. Two LLMs (Gemini 3.0 and GPT-5.2) were evaluated for automated thematic labeling using percent agreement, Cohens {kappa}, and a human-annotated reference set (n=100). The best-performing model was used to quantify theme prevalence, followed by qualitative review of representative narratives. ResultsGPT-5.2 demonstrated higher performance (F1=0.844) than Gemini 3.0 (F1=0.811), with substantial inter-model agreement across main themes (mean {kappa}=0.71). Posts reflected multidimensional experiences. The most frequent subtheme was Advice Seeking (84.1%), followed by Emotional Coping (55.6%). Common symptom-related themes included Pain (37.2%), Other Symptom Presentations (37.6%), Fatigue (24.7%), and Acute or Worsening Flares (30.2%). Diagnostic uncertainty was prominent, including confusion about laboratory results (24.0%) and emotional impact of uncertainty (33.0%). Qualitative review highlighted emotional distress, reliance on peer communities for interpretation of symptoms and labs, and difficulty managing complex treatment regimens. ConclusionLLM-enabled social media listening offers a scalable method for synthesizing large volumes of unstructured patient narratives, providing timely insights into lived experiences and unmet needs among individuals discussing lupus online. Findings align with established qualitative literature while highlighting persistent gaps in patient education, communication, and care coordination. This analytical framework can be applied across disease areas to support patient-centered care, measurement development, and evidence generation relevant to therapeutic and health-services research. What is already known on this topicO_LIPeople living with systemic lupus erythematosus (SLE) experience substantial unmet needs related to diagnostic uncertainty, symptom burden, emotional distress, medication challenges, and healthcare system barriers. C_LIO_LITraditional qualitative methods (e.g., interviews, focus groups, surveys) capture valuable patient perspectives but are limited by small sample sizes, recall bias, and restricted question frameworks. C_LIO_LISocial media listening has emerged as a promising way to collect real-time patient insights, and recent regulatory guidance acknowledges its value as patient experience data. However, systematic, scalable analysis of large patient-generated datasets has historically been constrained by analytic burden and variability. C_LI What this study addsO_LIThis study is among the first to apply state-of-the-art large language models (LLMs) to a large corpus of SLE-related social media posts, enabling scalable thematic analysis of thousands of patient narratives. C_LIO_LIIt provides a validated methodological framework for using dual-LLM agreement, human-annotated references, and performance benchmarking (precision, recall, F1) to ensure reliability in automated thematic labeling. C_LIO_LIFindings reveal a multidimensional patient burden consistent with prior studies while uncovering persistent gaps in patient education, confusion around laboratory testing, care coordination challenges, and heavy reliance on peer communities for advice. C_LIO_LIThe approach demonstrates that LLM-enabled social media listening can generate timely, granular, patient-prioritized insights at a scale unattainable by traditional methods. C_LI How this study might affect research, practice, or policyO_LIResearch: Establishes a reproducible, scalable framework for integrating LLM-based thematic analysis into patient-focused evidence generation, accelerating insight extraction from large unstructured datasets across disease areas. C_LIO_LIClinical practice: Highlights actionable gaps in patient education, communication, and care coordination, informing interventions to improve clinical encounters, shared decision-making, and symptom management support. C_LIO_LIPolicy and regulatory science: Demonstrates how social media-derived patient experience data, when paired with rigorous quality controls, can complement formal qualitative studies and support patient-focused drug development, measurement development, and health-services planning. C_LI
Long, Y.; Ou, Y.; Huang, G.; Tan, X.; Zhao, S.; Min, L.; Sun, C.; Luo, Z.; Pan, H.
Show abstract
ObjectiveAutoimmune diseases (ADs) markedly elevate venous thromboembolism (VTE) risk, yet the shared genetic architecture and tissue-specific regulatory mechanisms of this "Autoimmune-Thrombotic Axis" remain poorly defined. We aimed to characterize the genomic landscape of immunothrombosis to identify causal links and therapeutic targets. Approach and ResultsWe integrated large-scale GWAS data for VTE and 16 ADs using a multi-omics framework, including pleiotropy scanning, local genetic correlation, and summary-based Mendelian randomization (SMR). We identified 21 Immunothrombotic Shared Loci (ISLs) and 274 pleiotropic genes enriched in complement and coagulation cascades. Mendelian randomization (MR) analysis revealed a robust causal effect of genetically predicted systemic lupus erythematosus (SLE) on VTE risk (OR = 1.018, 95% CI: 1.008-1.029, P = 0.0003). Mechanistically, IL6R and PLCL1 emerged as central mediators with distinct tissue-specific regulatory partitioning. Colocalization confirmed that shared genetic susceptibility is primarily driven by expression in arterial tissues (aorta and coronary) rather than exclusively in immune cells. Furthermore, the lead SNP rs4129267 was identified as a potential predictor for VTE in rheumatoid arthritis patients, and drug prioritization nominated TNF inhibitors as promising candidates for mitigating thrombotic burden. ConclusionThis study establishes the first genomic atlas of the autoimmune-thrombotic axis, demonstrating that vasculature-specific gene regulation drives immunothrombosis. These findings provide a biological basis for VTE risk stratification and suggest that genotype-guided therapy may optimize vascular outcomes in AD patients.
Sakoda, S.; Yamashita, M.; Kumagae, H.; Yoshida, A.; Kawano, K.
Show abstract
BackgroundArthroscopic release for elbow stiffness is considered a minimally invasive and effective treatment. However, the extent to which each intraoperative step contributes to improvement in range of motion (ROM) has not been well investigated. PurposeTo sequentially evaluate the relationship between intraoperative surgical steps and changes in elbow ROM during arthroscopic release for severe elbow stiffness, and to identify the key procedural stage contributing most significantly to ROM improvement. MethodsFive elbows in five patients with severe elbow stiffness following fracture or dislocation were retrospectively reviewed. Arthroscopic release was performed using a stepwise posterior-based approach, starting from the posterior soft-spot portal, followed by exposure of the olecranon fossa and progression into the posteromedial compartment. Changes in elbow ROM were assessed at each intraoperative step, and ROM at final follow-up was also evaluated. ResultsAll patients demonstrated improvement in elbow ROM at final follow-up. Intraoperative ROM improvement did not occur in a continuous manner but rather in a stepwise fashion. Gradual improvement was observed with establishment of the posterior and posteromedial working spaces, followed by the most substantial increase in ROM immediately after release of the soft tissue attached to the posterior aspect of the humeral medial epicondyle. Although the maximum ROM achieved intraoperatively was not fully maintained at final follow-up, no patient experienced deterioration to preoperative ROM levels. ConclusionsIn arthroscopic release for severe elbow stiffness, improvement in elbow ROM occurs in a stepwise rather than continuous pattern. Release of the posteromedial structures attached to the posterior aspect of the humeral medial epicondyle may represent a critical turning point contributing significantly to ROM improvement.
Burns, K.; Kim, S.; Denq, W.
Show abstract
ObjectivesTo screen the entire genome for genes associated with risk for lateral epicondylopathy and improve understanding of underlying biological mechanisms and inform future research aimed at risk stratification and personalized prevention and treatment strategies. MethodsA genome-wide association study was conducted using UK Biobank data. Lateral epicondylopathy cases were identified based on electronic health records from individuals of European ancestry. Logistic regression tested associations between single-nucleotide polymorphisms and disease status, adjusting for sex, age, height, weight and ancestry principal components. Previously-identified candidate genes from the literature were also tested for association with lateral epicondylopathy. ResultsAmong 20,390 cases of lateral epicondylopathy, two loci reached genome-wide significance: one comprising 144 linked SNPs and one single SNP. The first locus, led by rs13127477 (p=7.7x10-12; OR 0.93, 95% CI 0.91 to 0.95), is located near three SIBLING genes (IBSP, MEPE and SPP1) involved in extracellular matrix remodelling at fibrocartilaginous entheses. The risk allele was associated with increased SIBLING gene expression, suggesting that excessive entheseal matrix remodelling contributes to disease susceptibility. The second locus was defined by rs138254824 (p=3.69x10-8; OR 3.42, 95% CI 2.23 to 5.25) near NEDD9 and TMEM170B. Previously reported collagen gene associations were not replicated. ConclusionIn the first genome-wide screen for lateral epicondylopathy, two loci were identified. These loci provide insight regarding the pathophysiology of lateral epicondylopathy and a roadmap for preventing and treating this injury with personalized medicine. Summary BoxO_ST_ABSWhat is already known on this topicC_ST_ABSLateral epicondylopathy is a common and disabling overuse tendon condition, yet its genetic basis has remained poorly characterised, with prior studies limited to small candidate gene analyses. What this study addsThis study provides the first genome-wide association analysis of lateral epicondylopathy, identifying two risk loci on chromosomes 4 and 6 and implicating SIBLING genes (IBSP, MEPE, and SPP1) involved in entheseal extracellular matrix remodelling. How this study might affect research, practice or policyThese findings offer new biological insight into disease susceptibility and challenge previously reported collagen gene associations.
Pierson, C. J.; Nasr, A. J.; Argenbright, C. M.; Thakkar, B.; Cabrera, A.; Greer, T. L.; Bebehani, K.; Jarrett, R.; Zafereo, J.
Show abstract
BackgroundReverse total shoulder arthroplasty (rTSA) is an increasingly common surgical procedure often performed to treat pain related to glenohumeral osteoarthritis or to rotator cuff arthropathy. Although surgical outcomes are generally excellent, recent evidence has found that postoperative pain ([≥] 3/10) two years following surgery is reported by an estimated 18% of patients. Recently, the NIH Acute-to-Chronic Pain Signatures program recommended longitudinal studies using select biomarkers to describe and predict individual patient responses to surgery. These data are not yet available for rTSA procedures. MethodsThis was a longitudinal cohort study performed at a single academic medical center. Twenty participants undergoing rTSA surgery were included, recruited from a tertiary hospital system in the southern United States. The first objective of this study was to describe changes in general pain intensity (Numerical Pain Rating Scale), widespread body pain, anxiety (General Anxiety Disorder-7), depression (Patient Health Questionnaire-9), neuropathic pain symptoms (painDETECT), and quantitative sensory testing from baseline to 6 weeks following rTSA. The second objective was to identify the baseline demographic and pain-related factors associated with 6-week postsurgical improvements in pain intensity. ResultsFrom before to after surgery, our cohort demonstrated significant improvement in shoulder pain intensity, widespread body pain, PainDETECT score, and temporal summation magnitude measured at the surgical deltoid. Degree of 6-week pain intensity improvement was associated with baseline pain intensity (F=18.79, p=0.0004) and temporal summation magnitude of the tibialis anterior (F=5.06, p=0.0380). ConclusionsPain intensity, location, nature, and mechanism can serve as biomarkers of the short-term postsurgical changes that can be expected following rTSA. Baseline pain intensity and temporal summation magnitude of the tibialis anterior were associated with the degree of pain improvement, suggesting their use for preoperative risk assessment. Future research should evaluate whether these 6-week biomarker changes are associated with the development of chronic postoperative pain at longer durations after surgery. Level of EvidenceLevel I, Prognostic Study
Lentz, T. A.; Burrows, J.; Brucker, A.; Wong, A. I.; Qualls, L.; Divakaran, R.; Centeno, C.; Suther, T.; Thomas, L.
Show abstract
BackgroundTotal knee arthroplasty (TKA), partial knee arthroplasty (pKA), and arthroscopic meniscectomy are among the most commonly performed procedures for knee osteoarthritis and degenerative meniscal tears in the United States, yet concerns persist regarding overuse, variable clinical benefit, and high costs. Orthobiologic treatments, including platelet-rich plasma (PRP) and bone marrow aspirate concentrate (BMAC), have emerged as less invasive alternatives, but downstream health care resource use (HCRU) and costs associated with these treatments relative to surgery are not well established. MethodsWe conducted a retrospective, observational cohort study using linked commercial insurance claims data and a national orthobiologic treatment registry to compare downstream HCRU and costs following orthobiologic versus surgical treatment of knee conditions. Two comparisons were evaluated separately: (1) PRP versus arthroscopic meniscectomy among patients with degenerative meniscal pathology and minimal osteoarthritis, and (2) BMAC with or without PRP versus TKA or pKA among patients with knee osteoarthritis. Eligible procedures occurred between 2016 and 2023. Propensity score matching was used to balance demographic and clinical confounders. Co-primary outcomes were total health care costs at 12 and 24 months post-procedure, with exploratory analyses at 36 and 48 months. Costs were estimated using multiple approaches, including Medicare-based estimates, commercial payer estimates, and aggregate allowed amounts. HCRU outcomes included outpatient visits, physical therapy, imaging, opioid use, repeat injections, and subsequent surgery. ResultsAfter matching, analyses included 167 PRP-treated patients matched to 1,670 meniscectomy patients and 165 BMAC/PRP-treated patients matched to 1,650 TKA/pKA patients, with good balance across pre-specified confounders. Progression to subsequent surgery after orthobiologic treatment was rare at 12 and 24 months in both cohorts. Compared with TKA/pKA, BMAC/PRP was associated with lower overall health care use for several services, including outpatient visits, physical therapy, knee radiographs, and opioid prescriptions, although magnetic resonance imaging was more frequent following orthobiologic treatment. Total costs at 12 and 24 months were consistently higher for TKA/pKA than for BMAC/PRP across all costing methods. In the PRP versus meniscectomy comparison, differences in health care use were modest, and costs were similar or lower for PRP depending on the costing approach. Exploratory analyses through 48 months showed similar patterns, with persistently low rates of subsequent surgery after orthobiologic treatment and generally higher cumulative costs following surgical intervention. ConclusionsIn this real-world, propensity-matched analysis of commercially insured patients, orthobiologic treatments with PRP or BMAC were associated with similar or lower downstream health care costs compared with commonly performed surgical alternatives for selected patients with degenerative meniscal tears or knee osteoarthritis. Progression to surgery following orthobiologic treatment was uncommon through two years and remained low in longer-term exploratory analyses. These findings support the consideration of orthobiologic therapies as potentially lower-cost alternatives to surgery for appropriately selected patients and may inform shared decision-making and payer policy.
Granitto, M.; Kim, E.; Forney, C. R.; Yin, C.; Diouf, A. A.; VonHandorf, A.; Dexheimer, P. J.; Parameswaran, S.; Chen, X.; Donmez, O. A.; Rowden, H.; Swoboda, C. O.; Shook, M. S.; Dunn, K.; Kebir, H.; Velez-Colon, M.; Kaufman, K.; Ho, D.; Laurynenka, V.; Edsall, L. E.; Brennan, V.; Gewurz, B. E.; Namjou, B.; Wilson, E.; Fisher, K. S.; Zabeti, A.; Lawson, L. P.; Alvarez, J. I.; Kottyan, L. C.; Weirauch, M. T.
Show abstract
BackgroundMultiple sclerosis (MS) is an immune-mediated demyelinating disease of the central nervous system affecting 2.8 million people worldwide. Both genetic and environmental factors contribute to MS risk, with Epstein-Barr virus (EBV) infection being an important environmental factor. To better clarify the role of EBV in MS, we examined its impact on gene expression, chromatin accessibility, and transcription factor binding in primary B cells and EBV-transformed B cells derived from patients with MS and healthy controls. ResultsRNA-seq and ATAC-seq analyses revealed extensive MS-dependent gene expression and chromatin accessibility differences in EBV-transformed, but not in primary B cells. These changes are largely accounted for by the expression levels of EBNA2, an EBV-encoded transcriptional regulator previously implicated in MS. ChIP-seq analysis revealed that EBNA2 binding with its interacting human partners RBPJ, EBF1, and PU.1 is highly enriched at MS genetic risk loci, with extensive EBNA2 allelic binding and increased enrichment at MS genetic risk loci in MS-derived cells. ConclusionsOur findings demonstrate that enhanced EBNA2 activity in MS alters human gene expression, chromatin accessibility, and transcription factor binding in an MS-dependent manner. Collectively, this study provides new insights into the molecular mechanisms through which EBV, particularly EBNA2, interacts with host genetic risk to contribute to MS pathogenesis.
Butzin-Dozier, Z.; Kumar, M.; Ji, Y.; Wang, L.-C.; Anzalone, A. J.; Hurwitz, E.; Patel, R. C.; Wong, R.; Bramante, C.; Sines, B.; on behalf of the National Clinical Cohort Collaborative,
Show abstract
BackgroundInterleukin-6 (IL-6) is a cytokine that plays a key role in systemic hyperinflammation and may mediate the relationship between acute COVID-19 and severe long-term outcomes such as Long COVID or death. IL-6 modulating drugs may reduce patients risk of severe post-COVID-19 outcomes. MethodsWe conducted an emulated target trial in a retrospective cohort of patients with moderate-to-severe rheumatoid arthritis who were prescribed IL-6 receptor antagonists (sarilumab or tocilizumab, pooled treatment) or other biologic agents (anakinra or baricitinib, pooled comparator) in 2022. We compared the 12-month cumulative incidence of mortality and Long COVID (diagnosed and probable) between groups using Super Learner and targeted maximum likelihood estimation, adjusting for covariates of interest. ResultsIn our cohort of 3,553 patients, we found that prescription of IL-6 receptor antagonists was associated with a lower 12-month cumulative mortality (adjusted relative risk (aRR) 0.40, 95% CI 0.27, 0.59), diagnosed Long COVID aRR 0.42, 95% CI 0.23, 0.78), and probable Long COVID (aRR 0.71, 95% CI 0.61, 0.83), compared to prescription of other biologic agents, among rheumatoid arthritis patients. ConclusionsIL-6 receptor antagonists may prevent the incidence of severe post-COVID-19 outcomes, such as Long COVID or mortality. This supports the hypothesis that IL-6 may be a mechanistic biomarker of COVID-19 sequelae and that acute COVID-19 severity may mediate this relationship.
Orkild, M. R.; Dybdahl, K. L.; Duun Rohde, P. D.
Show abstract
Inflammatory bowel disease (IBD) frequently co-occurs with immune-mediated and metabolic disorders, but whether these associations reflect shared genetics or causal effects remains unclear. We performed two-sample Mendelian randomization (MR) using large-scale genome-wide association study (GWAS) summary statistics to investigate potential causal effects of immune-mediated diseases and lifestyle traits on IBD, Crohns disease (CD), and ulcerative colitis (UC). SNP-based heritability and genetic correlations were estimated to contextualize findings. Following false discovery rate correction, genetically predicted psoriasis was positively associated with IBD (OR 1.15), CD (OR 1.23), and UC (OR 1.10), with the strongest effect observed for CD. Genetically predicted type 2 diabetes mellitus (T2DM) showed a modest inverse association with UC (OR 0.88). No lifestyle-related traits remained significant after correction. Sensitivity analyses indicated heterogeneity across instruments and evidence of directional pleiotropy in selected models, whereas no pleiotropy was detected for the T2DM-UC association. These findings support a role of psoriasis-related immune pathways in IBD susceptibility and suggest a potential inverse association between genetic liability to T2DM and UC.
Shi, Z.; Mandla, R.; Li, J.; Li, X.; Zhang, Z.; Chen, S.; Lapinska, S.; Flynn-Carroll, A. O.; Pasaniuc, B.; Epstein, D. J.; Mathieson, I.
Show abstract
Menieres disease (MD) is a chronic inner ear disorder characterized by recurrent vertigo, fluctuating sensorineural hearing loss, and tinnitus. Despite these distinctive symptoms, its etiology remains poorly understood. We performed a genome-wide meta-analysis of 8,969 cases and 1,962,542 controls across five large biobanks, identifying five independent genome-wide significant loci and estimating an observed-scale SNP heritability of 7% (SE 0.8%), consistent with a modest but significant genetic contribution to MD risk. Fine-mapping and integrative functional analyses implicate two convergent biological processes - developmental regulation of the inner ear, involving EYA4, EYA1, and LMO4 - and retinoic acid metabolism, with loci near CYP26A1/C1 and ALDH1A2 suggesting disrupted RA signaling in sensory and fluid-pressure homeostasis. These developmental regulator genes are robustly expressed in fetal and adult human inner ear cell types, supporting a model in which altered developmental programs predispose to adult vestibular and auditory dysfunction. Phenome-wide and genetic correlation analyses further reveal shared genetic architecture between MD and related traits, including vertigo, tinnitus, hearing loss, migraine, and sleep apnea, situating MD within a broader spectrum of sensory and neurological disorders. Collectively, these findings establish a genetic framework for Menieres disease risk and implicate developmental regulators and retinoic acid signaling as key contributing pathways.